Fatih Abasiyanik is a staff scientist at Single Cell Immunophenotyping Core/Chevrier Lab, Pritzker School of Molecular Engineering, The University of Chicago.

This website contains his personal interests, work experiences, skills, news, contact info, etc.

Contact
Mailing Address: PME, IGSB, 10120, 900 E 57th, 60637, Chicago, IL, US
Email: abasiyanik at uchicago dot edu
Tel: 773.834.8521 Linkedin: https://www.linkedin.com/in/abasiyanik

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Fatih Abasiyanik has been living in Chicago since 2017. He is a staff scientist at the Single Cell Immunophenotyping Core and Core Manager. He published +40 papers, supervised over 25 graduate students, and took a critical role (adviser, partner, etc.) in more than 7 start-up companies. He recently filled out a provisional patent application.

Announcement

Contents

• • Research Interest
  • Working Experience
  • Education:
  • Courses/ Workshops:

Research Interest:

1. 1. 1. Infectious Diseases
         • Sepsis and Septic Shock
         • Helicobacter pylori-Gastrointestinal Diseases
         • HPV and head/neck cancer
         • SARS CoV-2
         • NGS Technologies

• Development of bioanalytical tools/assays/methods (immunoassays, DNA-based PCR technologies, NGS methods, biosensors, etc.) to analyze biomarkers (i.e., DNA, RNA, protein) in biological samples (saliva, blood, food, and environmental samples).
  • Host biomarker analysis (e.g., cytokines)
  • Pathogen biomarker detection (e.g., DNA, RNA, antigen)
  • Food analysis and food policy
  • Pollutant detection
• Data Science and Analysis of Medical Data
  • Prognostic and diagnostic-related data analysis
  • Prediction of disease outcome based on internal and external data (measurements) (i.m.: symptoms, lab data, patient info, etc.) (e.m.: environmental data, weather, and related data, etc.)
• Formal/Informal biotech education and training of educators
  • Biotech Technology Transfer and Enterpronuial Ecosystem
  • Design Thinking
  • Idea incubation
  • Third Generation Universities and design of the undergraduate curriculum to graduate students as a part of the entrepreneurial ecosystem.

• Working Experience:

  • • 1. Staff Scientist, Single-Cell Immunophenotyping Core, and Chevrier Lab, The University of Chicago, 2021-current
      2. Research Professional 2017 – 2021
         PME, The University of Chicago, Chicago, IL, USA
      3. Associate Prof and Vice Dean of Medical School August/2016 – January /2017
         Alatoo International University, Bishkek, Kyrgyzstan (KG)
      4. Associate Prof, Program Chair of Genetics and Bioengineering Department December/2014 – July/2016
         Engineering Faculty, Fatih University, Istanbul, Turkey
      5. Associate Prof, Founding Chair of Biotechnology Ph.D. Program January /2011 – December/2014
         Engineering Faculty, Fatih University, Istanbul, Turkey
      6. Associate Prof, Vice Dean, Engineering Faculty October /2011 – December/2012Fatih University, Istanbul, Turkey
      7. Assistant/Assoc. Prof, Vice-Chair, Genetics, and Bioengineering Department January /2007 – December/2014
         Fatih University, Istanbul, Turkey
      8. Assistant. Prof, Chairman, Biology Department March/2005 – August/2007
         Fatih University, Istanbul, Turkey
      9. Instructor, Biology Department July/2004 – February/2005
         Fatih University, Istanbul, Turkey
      10. Research and Teaching Assistant, Biology Department December/1997 – July/2004
          Fatih University, Istanbul, Turkey
      11. STEM and Biology Teacher, August/1992 – July/1997
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  Education:

  • • 1. BSE, Ankara University, Agricultural Engineering, 1991
      2. MSc, Fatih University, Medical Microbiology, 2000
      3. Ph.D., Gebze Institute of Technology, Biochemistry, 2005

  Courses/ Workshops:

  • • • Java Programing Language
      • SPLC related tools: Selenium, Maven, Cucumber, TestNG, etc.
      • Entrepreneurship for Science and Medicine, Polsky Center for Entrepreneurship and Innovation at Chicago Booth,  The University of Chicago
      • Intro to Venture Capital: A toolkit for analyzing and financing startups, Polsky Center for Entrepreneurship and Innovation at Chicago Booth,  The University of Chicago
      • Certificated Work training on different topics at the Chicago University
        • Animal care and use procedure certification
        • Data security and privacy certification
        • Rodent euthanasia
        • Occupational health and safety information module for animal users
        • Human Research Course for the staff
        • Harassment and Discrimination Prevention
      • Whole-genome sequencing of bacterial genomes: tools and applications course, Coursera, 2019
      • Phyton  Programming Essentials Course, Coursera, 2019
      • Phyton for Data Science Course, Coursera, 2019
      • Phyton for Data Science and AI Course, Coursera, 2019
      • Open Meeting Act on-line training, Office of the Attorney General State of Illinois, 2017
      • Databases and SQL for Data Science Course
      • World Future Forum, Chicago, US 04/25-26/2019
      • Illinois Charter School Conference 2018, Chicago, US 11/15/2018
      • OPEN Chicago Annual Business Conference 2018, Chicago, US 11/10/2018
      • Open Meeting Act on-line training, Office of the Attorney General State of Illinois, 2017
      • Halal Food Conference, Malaysia 10/15/2015
      • Computer-Aided Drug Design, Koc University, 2/2-5/2007
      • The use of bioinformatics in genomics workshop, COMSTECH, Pakistan 8/19/-9/2/ 2006
      • The practical and theoretical courses on the basic protein purification techniques, Genetic Engineering and Biotechnology Research Institute, TUBITAK, Gebze, Turkey 9/2-6/2002
      • Pedagogic-Formation Summer School, Marmara University, Istanbul, Turkey June -August 1995
      • Teaching Biology Workshop, Istanbul, Turkey July 1995
      • STEM education Workshop, Almaty, Kazakhstan January 1993

   

   

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